Ctrl KSoftwareProjectsOrganisationsFeedback Sign inCtrl KLimited functionality: Your browser does not support JavaScript.All software1FilterClearOrder byOrder byKeywords119Program languages72Licenses14121-12 of 423D Slicer3D Slicer is a free, open source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures.3D3DSlicerExtension+ 7C++PythonCMake+ 545AMUSECombine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.High performance computingMulti-scale & multi model simulationsWorkflow technologiesAMPLCFortran+ 2566ArpraArpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.Affine ArithmeticArbitrary PrecisionInterval Arithmetic+ 2CMakefileM410asrlitcompareA tool written in rmarkdown or assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.ASReviewinter-rater reliabilityliterature screening+ 1HTMLC++JavaScript+ 1420ASTRA ToolboxThe ASTRA Toolbox is a Python and MATLAB library of flexible, high-performance GPU-accelerated primitives for 2D and 3D tomography.CTGPUImage reconstruction+ 4C++CudaMATLAB+ 821206compareMS2compareMS2 is a tool for direct comparison of tandem mass spectrometry datasets, typically from liquid chromatography-tandem mass spectrometry (LC-MS/MS), defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics and food science.Forensicsmass spectrometryphylogenetics+ 1JavaScriptCHTML+ 2214Compas ToolkitThe Compas Toolkit is a high-performance C++ library offering GPU-accelerated functions for use in quantitative MRI research.GPUHigh performance computingMRICudaC++Julia+ 430COPASICOPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.DynamicsoptimizationParameter estimation+ 3C++JavaFortran+ 17122501DALESDALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers. FortranCTeX+ 82411DeepRankDeep learning framework for data mining protein-protein interactions using CNNBig dataMachine learningOptimized data handlingPythonRC+ 2867DuMuxDuMux is short for "DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media". It is an open-source simulator and research code in modern C++. It provides a framework for the implementation and application of porous media model concepts and constitutive relations.porous mediaSimulationC++CMakePython+ 210eAstroVizThis tool can convert and visualize radio astronomy measurement sets, as well as most LOFAR intermediate data products. It also performs RFI mitigation.LOFARradio astronomyRFIJavaC++Cuda+ 3141234
