All software
haddock3
Haddock3 (High Ambiguity Driven protein-protein DOCKing) is a modular software for for the integrative modeling and refinement of biomolecular complexes.
- biomolecular complexes
- docking
- energetics
- + 4
- BitBake
- C
- C++
- + 11
COPASI
COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.
- Dynamics
- optimization
- Parameter estimation
- + 3
- Batchfile
- C
- C#
- + 17
ASTRA Toolbox
The ASTRA Toolbox is a Python and MATLAB library of flexible, high-performance GPU-accelerated primitives for 2D and 3D tomography.
- CT
- GPU
- Image reconstruction
- + 4
- Batchfile
- C
- C++
- + 8
Parallel Ice Sheet Model (PISM)
An open-source modelling framework for ice sheets and glaciers
- C++
- geophysics
- Glacier
- + 5
- C
- C++
- CMake
- + 9
DuMux
DuMux - DUNE for Multi-{Phase, Component, Scale, Physics, …} flow and transport in porous media and more. The swiss army knife of porous media research. Open-source simulator in modern C++.
- Earth and Environmental Sciences
- Engineering
- Finite volume method
- + 9
- C
- C++
- CMake
- + 2
AMUSE
Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.
- High performance computing
- Multi-scale & multi model simulations
- Workflow technologies
- Assembly
- C
- C++
- + 23
snvec
snvec: Pre-computed Precession-Tilt solutions and C code.
- astronomical solution
- Astrophysics
- obliquity
- + 3
- C
SAGECal
Fast, memory efficient and GPU accelerated radio interferometric calibration program
- Big data
- GPU
- High performance computing
- C
- C++
- CMake
- + 5
NNPDF
Fitting proton substructure to observation data using neural networks
- Machine learning
- C
- CSS
- HTML
- + 5
OpenLB
OpenLB is a C++ package for the implementation of lattice Boltzmann methods (LBM) to address a vast range of transport problems, e.g. in computational fluid dynamics. The modular open source code enables fast implementation of academic test problems and advanced engineering applications.
- Computational Fluid Dynamics
- High Performance Computation
- Lattice Boltzmann Methods
- + 4
- C
- C++
- Makefile
- + 2
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
Code and data underlying the publication: City3D: Large-scale Building Reconstruction from Airborne LiDAR Point Clouds
- Building
- Point Cloud
- Surface-reconstruction
- + 1
- Automake
- C
- C++
- + 8
DeepRank
Deep learning framework for data mining protein-protein interactions using CNN
- Big data
- Machine learning
- Optimized data handling
- C
- Makefile
- Python
- + 2