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openPSTD

openPSTD is a Python-based research software that allows efficient and detailed calculation of sound propagation in a 2D built environment. It is especially useful as a reference tool for other developed software on acoustic sound propagation.

Acoustics
GPU
python

C++
C
GLSL
+ 3

PyChelator

PyChelator is a Python-based Colab and web application for metal chelator calculations, taking into account pH, temperature, and ionic strength. The build-in constants can be used for EGTA and ATP as chelators, together with Calcium and Magnesium as metals. User-defined constants can be used.

application
calcium
chelator
+ 7

Jupyter Notebook
JavaScript
HTML
+ 2

ROBIST

Robust Optimization by Iterative Scenario Sampling and Statistical Testing

optimization
python

Python

sirup

Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.

ip-rotation
openvpn
python
+ 1

Python
Shell

snakemake-wrf

A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.

geospatial
High performance computing
python
+ 1

Jupyter Notebook
Python
Shell

WAM2layers

WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).

atmospheric rivers
ERA5
hydrological cycle
+ 4

Python
Jupyter Notebook
Shell

Aiida-CHAMP

The aiida-champ plugin to handle the CHAMP workflow using AiiDA.

python
workflow

Python
Shell

Arctic Web Map

Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.

data collection
python
wildlife

Python
JavaScript
CSS
+ 1

BIOMERO

a scalable and extensible image analysis framework

biaflows
bioimaging
biomero
+ 9

Python
Shell
Dockerfile

check-deps

This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.

Dependency Hell
python
Workflow technologies

Python
CSS
Awk
+ 2

DG_RoomAcoustics

DG_RoomAcoustics is an open-source python-based software for room acoustics using the time-domain wave-based method. It implements the nodal discontinuous Galerkin method for spatial discretization of the linear acoustic equations, integrated over time with explicit schemes.

Acoustics
High performance computing
python

Python

Discuit

Python package with the goal to split datasets (e.g. words defined by several variables) into subsets that are as comparable as possible.

Data
linguistics
python
+ 1

Python
Shell