All software
Chemical Analytics Platform
Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.
- Workflow technologies
- (Shell)
- (Smarty)
EXCITED Machine Learning Workflow
An open workflow for creating machine learning models for estimating the global biospheric CO2 exchange.
- CO2
- Data Analysis
- geospatial
- + 4
- ("Jupyter Notebook")
- (Python)
Experiment Launcher
Generate and launch Jupyter notebooks for your users.
- Workflow technologies
- (Makefile)
- (Python)
fieldcompare
A Python package for regression testing simulation results. Compare field data supporting various structured formats such as CSV and VTK file formats, through Python API or the command-line interface.
- Data Analysis
- Numerical analysis
- python
- + 1
- (Python)
HERA_CAL_QUANTUM
Radioastronomy calibration pipeline of the HERA telescope ported on quantum computers
- calibration
- python
- Quantum Computing
- + 1
- ("Jupyter Notebook")
- (Python)
- (Shell)
infra-stemmus-scope
Set-up and run STEMMUS-SCOPE on SURF research cloud (SRC)
- Workflow technologies
JUBE
JUBE is a generic, lightweight, configurable environment to run, monitor and analyse application execution in a systematic way. This software is commonly used to execute benchmarks and complex workflows on High Performance Computers, but is not limited to these systems.
- Benchmarking
- High performance computing
- HPC
- + 4
- (C)
- (Python)
- (Shell)
NPLinker eScience Workshop GenMetMine Materials
These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.
- Data mining
- genomics
- Inter-operability & linked data
- + 4
One button compute
Web application for running a CWL workflow on a bunch of files.
- Optimized data handling
- Workflow technologies
- ("Common Workflow Language")
- (HTML)
- (Python)
oTree Demo Experiments
oTree demo experiment: Public goods game
- behavioral research
- oTree
- Workflow technologies
- (HTML)
- (JavaScript)
- (Procfile)
- + 1
ReaxPro framework ontology
This application ontology is dedicated to the ReaxPro framework for the multi-scale modeling of catalytic materials.
- Multi-scale & multi model simulations
- ontology
- Workflow technologies
repl-session
A script that runs a session on any Read-Eval-Print-Loop (REPL), following a description in a JSON file. The output JSON contains the commands entered including the results from the REPL session. This can be useful to drive documentation tests or literate programming tasks.
- Literate Programming
- python
- Workflow technologies
- (Nix)
- (Python)