All software
APE
A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.
- Java
- Program synthesis
- Workflow technologies
- (ANTLR)
- ("Common Workflow Language")
- (Java)
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- (Batchfile)
- (Java)
- (Shell)
Data underlying the BSc project: "An analysis of Java release practices on GitHub"
Data underlying the BSc project: "An analysis of Java release practices on GitHub"
- GitHub
- Java
- Maven
- + 2
- (Markdown)
- (Other)
- (Rust)
- + 1
jQUDT
Java Library to deal with QUDT units and conversions between them. QUDT is an ontology for "Quantities, Units, Dimensions and Data Types in OWL and XML"
- Inter-operability & linked data
- Java
libGPML
libGPML is an open-source Java library for working with Graphical Pathway Markup Language (GPML).
- Graphical Pathway Markup Language
- Java
- (HTML)
- (Java)
- (TeX)
RESTful APE
RESTful API for the APE (Automated Pipeline Explorer) library.
- Java
- Program synthesis
- REST API
- + 1
- (Dockerfile)
- (Java)
Verticox+
Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution is based on the Verticox algorithm from Dai et al., 2022. It has been adapted to be used within the Vantage6 framework.
- federated learning
- Java
- privacy preservation
- + 3
- (Dockerfile)
- (Java)
- (Jinja)
- + 4