All software
ICOS data repository
The ICOS Portal app is a FAIR linked data repository for metadata and data. In first instance primarily targeted at hosting the high quality data from ICOS. The repository is optimized for machine to machine communication. Instances in production now for ICOS, Swedish SITES and ICOS Cities networks.
- Data
- Inter-operability & linked data
- metadata
- + 3
- (HTML)
- (Java)
- (JavaScript)
- + 3
i-VRESSE jupyterlab haddock3 configurator
Jupter Lab extension to create/edit haddock3 configuration file.
- Inter-operability & linked data
- (CSS)
- (JavaScript)
- (Python)
- + 1
jQUDT
Java Library to deal with QUDT units and conversions between them. QUDT is an ontology for "Quantities, Units, Dimensions and Data Types in OWL and XML"
- Inter-operability & linked data
- Java
lofar-ld
Publish LOFAR catalog as Linked Data.
- Inter-operability & linked data
- (Makefile)
NanopubJL
JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook
- Inter-operability & linked data
- (CSS)
- (Dockerfile)
- (JavaScript)
- + 3
NPLinker eScience Workshop GenMetMine Materials
These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.
- Data mining
- genomics
- Inter-operability & linked data
- + 4
Rosemary
Rosemary is a plugin for YASGUI (Yet Another SPARQL GUI), facilitating creation of SPARQL queries without requiring knowledge of SPARQL.
- Data
- database
- Data management
- + 10
- (CSS)
- (Dockerfile)
- (HTML)
- + 1
Scifeon Lims, ELN and Workflow Automation
Scifeon is a modular lab informatics platform combining LIMS and ELN to streamline workflows, ensure compliance, and increase productivity—designed for biotech and regulated labs.
- auditory processing
- Big data
- bioinformatics
- + 14
ShareTrait website
Share Trait web application is a web application that allows users to deposit trait data in the Share Trait database.
- Data
- Inter-operability & linked data
- metadata
trex2champ
trex2champ is a tool that allows reading output files of quantum chemistry codes (GAMESS and trexio files) and writing input files for CHAMP in V3.0 format.
- Inter-operability & linked data
- python
- (Python)