Netherlands eScience Center
National platform for the development and application of domain overarching software and methods for the scientific community
VU-Lab
This is the configuration and documentation page of the LARA lab automation setup at the VU. It incorporates SiLA servers for robotic arm, shakers and a microplate reader and runs the LARA lab automation framework for scheduling and orchestration.
- Dynamic scheduling
- laboratory automatization
- orchestration
- Batchfile
- Dockerfile
- Python
- + 1
WAM2layers
WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).
- atmospheric rivers
- ERA5
- hydrological cycle
- + 4
- Jupyter Notebook
- Python
- Shell
wntr-quantum
wntr-quantum (pronounced winter-quantum) extends the capabilities of the popular wntr package for water network modelling and analysis to quantum computing routine.
- Quantum Computing
- Water Distribution Networks
- Python
- Shell
Workflomics
Web platform for workflow exploration and benchmarking in bioinformatics
- Inter-operability & linked data
- Workflow technologies
- CSS
- HTML
- JavaScript
- + 1
WRFpy
WRFpy is a python application that provides an easy way to set up, run, and monitor Weather Research and Forecasting simulations
- Data Simulation
- python
- Python
WRF-runner
Simple shell script to run a complete WPS/WRF experiment in one go
- climate
- Forecasting
- workflow
- + 1
- Shell
xarray-regrid
An xarray plugin that adds regridding utilities for datasets and dataarrays.
- geospatial
- python
- xarray
- Python
Xenon
If you are using remote machines to do your computations, and don’t feel like learning and implementing many different APIs, Xenon is the tool for you.
- batch-job
- distributed computing
- FTP
- + 11
- Batchfile
- Java
- Shell
Xenon command line interface
A command line interface for the Xenon library that allows you to use remote machines to do your computations.
- High performance computing
- Batchfile
- Common Workflow Language
- Dockerfile
- + 2
Xenon Docker images
For your testing needs a collection of Docker images with different file systems and batch schedulers.
- High performance computing
- Workflow technologies
- Clojure
- Dockerfile
- Python
- + 4
Xenon gRPC server
Run applications remotely via a gRPC interface.
- High performance computing
- Java
XrayTIFF2h5
This repository provides a workflow to transform X-rays data originally stored in .TIFF format, into .h5. Overall, this makes the data more compressed and easier to process in machine learning pipelines, such as unsat.
- Optimized data handling
- Workflows
- Makefile
- Python