Netherlands eScience Center
National platform for the development and application of domain overarching software and methods for the scientific community
PanTools
PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.
- Data Analysis
- Gene classification
- pangenomics
- Java
- Snakemake
- Python
- + 1
paradigma
A toolbox to calculate digital biomarkers for wearable sensors in Parkinson's disease.
- Python
- Jupyter Notebook
parareal
This package runs the parareal algorithm on a black-box simulator. Parallelisation is managed through Dask.
- High performance computing
- Numerical analysis
- CSS
- Jupyter Notebook
- Python
- + 5
PattyAnalytics
Library for aligning and scaling one point cloud to an other.
- Big data
- Point Cloud
- Python
Via Appia Visualization
A web application which visualizes the point clouds and additional data gathered in the Via Appia project with WebGL.
- Visualization
- JavaScript
- HTML
- CSS
pbg-ld
Access integrated data on genes and associated traits in plants
- Data Analysis
- genomics
- Inter-operability & linked data
- PLpgSQL
- Shell
- Python
- + 2
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- Python
- TeX
- Makefile
pdbtbx-ts
Want to parse Protein Data Bank files in JavaScript
- Optimized data handling
- Rust
- JavaScript
- TypeScript
PerfectFit
This is a virtual coach system that coaches users into being more physically active and stop smoking.
- Big data
- health
- JavaScript
- Gherkin
- Shell
PIDIMEHS library
Showcases a diachronic analysis of the Dutch Royal Library's newspaper archive.
- Big data
- Real time data analysis
- Text analysis & natural language processing
- + 1
PIQMIe
A web tool for mass spectrometry-based proteomics data analyses
- Data Analysis
- mass spectrometry
- Optimized data handling
- + 2
- HTML
- JavaScript
- Python
- + 3
PlanEO Dashboard
Provides an interactive interface for visualizing geographical data relevant to the MINE-DD project, including pathogen distribution, risk factors, and demographic analysis through both point data and raster overlays.
- Data Analysis
- Demographic Analysis
- Geographic Visualization
- + 8
- TypeScript
- Svelte
- Python
- + 5