Maastricht University
Prestigious Dutch university known for its international outlook.
FHIR to CAPACITY
Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.
- FAIR
- Inter-operability & linked data
- ("Jupyter Notebook")
- (Python)
jQUDT
Java Library to deal with QUDT units and conversions between them. QUDT is an ontology for "Quantities, Units, Dimensions and Data Types in OWL and XML"
- Inter-operability & linked data
- Java
Ldot
Workflow and participant registration support
- GDPR
- participant information
- storage
- + 2
libGPML
libGPML is an open-source Java library for working with Graphical Pathway Markup Language (GPML).
- Graphical Pathway Markup Language
- Java
- (HTML)
- (Java)
- (TeX)
nanopub
The nanopub library provides a high-level, user-friendly python interface for searching, publishing and retracting nanopublications.
- Inter-operability & linked data
- (JavaScript)
- (Python)
- (Shell)
PathVisio
PathVisio is a free open-source software to curate biological pathway models.
- bioinformatics
- PathVisio
- Systems Biology
- + 2
- (Batchfile)
- (CSS)
- (HTML)
- + 4
PinPath
PinPath is an R package and web-based application for visualizing omics data, such as genomics, transcriptomics, proteomics, and metabolomics, onto pathway diagrams from WikiPathways, KEGG, and custom GPML/KGML files.
- bioinformatics
- KEGG
- Omics
- + 2
- (HTML)
- (R)
pybacting
Python wrapper around Bacting.
- Biology
- Chemistry
- python
- (Just)
- (Python)
rdfsolve
Extract RDF schemas from SPARQL endpoints and convert to multiple formats (VoID, LinkML, JSON-LD).
- (Dockerfile)
- ("Jupyter Notebook")
- (Python)
- + 1
rWikiPathways
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
- bioinformatics
- WikiPathways
- (HTML)
- (R)
- (TeX)
Scholia
Graphical User Interface around Wikidata that uses SPARQL to collect data
- Wikidata
- (CSS)
- (Dockerfile)
- (HTML)
- + 3
the FAIR extension
A web browser extension to evaluate Digital Object FAIRness developed at Maastricht University Library.
- FAIR assessment
- FAIR Digital Objects
- FAIR metrics
- (CSS)
- (HTML)
- (JavaScript)