Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.

bioinformatics
Cheminformatics

Java
TeX

BlueObelisk Euclid

A library of numeric, geometric and XML routines

Java
HTML

BridgeDb Java

Java library for identifier mapping

Data
persistent identifiers

Java
Perl
Shell
+ 5

226

BridgeDbR

R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

persistent identifiers
Statistics

R
TeX
HTML

BridgeDb Webservice

REST API for identifier mapping

persistent identifiers
REST API
webservice

Java
HTML
JavaScript
+ 1

caselawnet

Caselawnet constructs citation networks from collections of Dutch case law.

Big data

Jupyter Notebook
Python
HTML
+ 1

Case Law App

Web application for exploring the citation network of Dutch court decisions.

Text analysis & natural language processing
Visualization

JavaScript
CSS
HTML

Chemistry Development Kit

Open Source cheminformatics library.

Cheminformatics
Chemistry
Computational Chemistry

Java
Pawn
HTML

1733

CMLXOM

Java library for working with Chemical Markup Language files.

Chemical Markup Language
Chemistry
XML

Java
XSLT
HTML
+ 1

CrowdED

CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.

Citizen Science
Crowdsourcing
Data Simulation

Python
R
Dockerfile

fairworkflows

A python library for constructing, annotating and publishing scientific workflows described using semantic technologies.

Python
HTML
Common Workflow Language
+ 1

FHIR to CAPACITY

Retrieves and converts patient records from a FHIR endpoint and uploads it to a CAPACITY registry.

FAIR
Inter-operability & linked data

Jupyter Notebook
Python