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13-24 of 178

CanDIG CHORD

CHORD is a project to build a federated, Canadian, national data service for privacy- sensitive genomic and related health data. It allows the technologies and services being built by CanDIG and its international partners to be made available to the Canadian health research community more broadly.

CanDIG
GA4GH
genomics

Python
Lua
Shell

CAT

CAT is a collection of tools designed for the construction of various chemical compounds.

High performance computing

Python
Shell

CBRAIN

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

CBRAIN
cluster
Data Analysis
+ 6

Ruby
HTML
JavaScript
+ 3

Ceiba

Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.

Optimized data handling

Python
TeX
Shell
+ 1

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2

cerulean

A Python 3 library for talking to HPC clusters and supercomputers.

High performance computing
SFTP
SLURM
+ 2

Python
Shell
Dockerfile

cffinit

A web form to initialize CITATION.cff files which you can use to include citation information into your software repository.

Software Citation

TypeScript
Vue
JavaScript
+ 3

Chemical Analytics Platform

Chemical Analytics Platform is a freely available Virtual Machine encompassing tools, databases, and KNIME workflows.

Workflow technologies

Shell
Smarty

chimp-classifier

The Python package `junglesounds` is a machine learning pipeline for classifying bioacoustic data using machine learning. The pipeline is reusable for other settings and species or vocalization types as long as a certain amount of labeled data has been collected.

audio
Audio processing
bioacoustics
+ 2

Jupyter Notebook
Python
Shell

cleanX

CleanX is an open-source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological images.

Image processing
Machine learning

Jupyter Notebook
Python
TeX
+ 3

ClinDIG

ClinDIG provides a federated data management and analysis solution for clinical and genomic data while to provide opportunity for distributed analysis centred on protecting patient privacy.

clinical
federated
genomics
+ 1

Smarty
Shell
Python
+ 4

compareMS2

compareMS2 is a tool for direct comparison of tandem mass spectrometry datasets, typically from liquid chromatography-tandem mass spectrometry (LC-MS/MS), defining a distance as a function of the share of similar spectra. Applications span biomedicine, phylogenetics, forensics and food science.

Forensics
mass spectrometry
phylogenetics
+ 1

JavaScript
C
HTML
+ 2