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157-168 of 179

SimVascular

The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.

Cardiovascular
Fluid mechanics
Medical image computing
+ 1

C++
Tcl
Makefile
+ 9

sirup

Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.

ip-rotation
openvpn
python
+ 1

Python
Shell

STEMMUS_SCOPE

Integrated code of SCOPE and STEMMUS

Jupyter Notebook
MATLAB
Python
+ 2

Stroll

Semantic Role labeling for Dutch. Understanding who does what, where, to whom.

Text analysis & natural language processing

Python
Shell

Structure from Motion

Construct 3D pointclouds from a set of 2D images

Python
Shell
MATLAB
+ 2

sv-callers

Highly portable parallel workflow to detect structural variants in cancer genomes.

Big data
High performance computing
Workflow technologies

Python
Shell

sv-channels

Genome-wide detection of structural variants using deep learning

Machine learning

Python
Jupyter Notebook
R
+ 1

sv-gen

Highly portable parallel workflow to generate artificial genomes with structural variants.

Big data
High performance computing
Workflow technologies

Python
Shell

Tissue Simulation Toolkit

Tissue Simulation Toolkit (TST) 2.0 is an efficient C++ library for two-dimensional simulations of Glazier and Graner's Cellular Potts model (Glazier and Graner, 1993). It is suitable for simulations with live visualization as well as batch simulations on clusters.

Cellular Potts Model
Chemotaxis
Embryology
+ 1

C++
Python
Cuda
+ 5

TraP: The LOFAR Transients Pipeline

The LOFAR Transients Pipeline (or "TraP") is a Python and SQL based system for detecting and responding to transient and variable sources in a stream of astronomical images.

Image processing
radio astronomy
Source association
+ 3

Python
PLpgSQL
Mako
+ 1

Trustchain

Trustchain is a decentralized approach to public key infrastructure designed for application to digital identity. Based on the W3C standards for decentralized identifiers (DID) and verifiable credentials (VC), it enables the creation of chains of trustworthy DIDs between recognizable legal entities.

Decentralized public key infrastructure
Digital identity
Verifiable credentials

Rust
HTML
Shell

TulipaEnergyModel

This package provides an optimization model for the electricity market and its coupling with other energy sectors. The objective is to determine the optimal investment and operation decisions for different types of assets.

optimization

Julia
Shell