All software
ochre
A tool to clean up text generated by OCR using individual words as well as their context.
- Machine learning
- Text analysis & natural language processing
- Common Workflow Language
- HTML
- Jupyter Notebook
- + 2
ParticleDA.jl
Julia package to perform data assimilation with particle filters, supporting both thread-based parallelism and distributed processing using MPI.
- Data assimilation
- Julia Package
- Particle filter
- Julia
- Jupyter Notebook
- Shell
sfb-annotator
Annotate field books of natural history collections
- Inter-operability & linked data
- CSS
- Dockerfile
- Java
- + 4
swiftmhc
SwiftMHC is a deep learning algorithm for predicting pMHC structure and binding affinity at the same time.
- deep learning
- Protein-Protein Interaction
- Transformer
- Jupyter Notebook
- Mask
- Python
- + 1
Code underlying the publication: From pixels to perceptions: using human similarity judgments to enrich urban space embeddings
Code underlying the publication: From pixels to perceptions: using human similarity judgments to enrich urban space embeddings
- human perceptions
- similarity judgments
- street-level imagery
- + 1
- Jupyter Notebook
- large-text-file
- Markdown
- + 2
Effects of PLU Polling Interval
The codes associated with the publication: The Effects of PLU Polling Interval on the Reconstructed OD Matrix: A Dutch Case Study Using a Data-Driven Method
- Bayesian
- GSM
- OD matrix
- + 2
- Jupyter Notebook
- Markdown
- Other
epistemic-bellman-operators
Epistemic Bellman Operators; code underlying the dissertation ‘Bayesian Model-Free Deep Reinforcement Learning’
- Bayesian modelling
- Deep Reinforcement Learning (DRL)
- dynamic programming
- + 2
- Jupyter Notebook
- Markdown
- Python
IntervalMDPAbstractions.jl_ReproducibilityPackage
Data and code underlying the publication: Scalable control synthesis for stochastic systems via structural IMDP abstractions
- embedded systems
- Markov processes
- Stochastic control and optimization
- C
- C++
- HTML
- + 10
reference_set_selection_benchmark
Code underlying the publication: "Benchmarking the impact of reference genome selection on taxonomic profiling accuracy"
- Genome Selection
- Lineage Abundance Estimation
- Sequence Clustering
- + 2
- Jupyter Notebook
- Markdown
- Other
- + 3
Software supporting the article: Community Detection for Temporal Weighted Bipartite Networks
Software supporting the article: Community Detection for Temporal Weighted Bipartite Networks
- Bipartite Network
- Bipartite Networks
- Community Detection
- + 4
- Jupyter Notebook
- Markdown
- Other
- + 1
topological_SB_matching
Code underlying: Topological Schrödinger Bridge Matching
- distribution matching
- generative models
- graph and simplicial complex
- + 1
- Jupyter Notebook
- Markdown
- Other
- + 3
anonymoUUs
Python package to replace identifiable strings in multiple files and folders at once
- de-identification
- python
- text
- Jupyter Notebook
- Python