All software
self-hosted runners
Collection of resources to set up GitHub runners on self-hosted infrastructure
- High performance computing
- Dockerfile
- Shell
ToxTempAssistant
LLM-based web-app to assist users in drafting ToxTemp, a template for describing in-vitro toxicity test methods in compliance with GD211.
- metadata
- Dockerfile
- HTML
- JavaScript
- + 4
Umple
Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort
- Code Generation
- Software Modeling
- State Machines
- + 1
- Batchfile
- C++
- CSS
- + 19
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- AngelScript
- Dockerfile
- Python
haddock3-webapp
Web app to build haddock3 configuration and run it.
- CSS
- Dockerfile
- JavaScript
- + 2
i-VRESSE bartender
Bartender is a middleware web service to schedule jobs on various infrastructures.
- Workflow technologies
- Dockerfile
- Mako
- Python
BGC Viewer
A viewer for biosynthetic gene cluster data.
- bioinformatics
- Gene Clusters
- natural products
- + 1
- CSS
- Dockerfile
- HTML
- + 6
BIOMERO
a scalable and extensible image analysis framework
- biaflows
- bioimaging
- biomero
- + 9
- Dockerfile
- Python
- Shell
boatswain
Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.
- containers
- docker
- Dockerfile
- Python
c3s-magic-wps
Web Processing Service for Climate Data Analysis in the MAGIC project.
- Dockerfile
- Makefile
- Python
- + 1
Ceiba
Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.
- Optimized data handling
- Dockerfile
- Python
- Shell
- + 1
Cerise
Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.
- High performance computing
- Optimized data handling
- Workflow technologies
- Common Workflow Language
- Dockerfile
- Makefile
- + 2