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CrowdED

CrowdED is a two-staged statistical guideline for optimal crowdsourcing experimental design in order to a-priori estimate optimal workers and tasks' assignment to obtain maximum accuracy on all tasks.

Citizen Science
Crowdsourcing
Data Simulation

Python
R
Dockerfile

cvasl

This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.

Jupyter Notebook
Python
Dockerfile
+ 2

cwltool

The reference implementation of the Common Workflow Language standards

CommonWL
CWL
SciWorkflows

Python
Common Workflow Language
Shell
+ 4

eEcology-SMS-reciever

If you have birds flying around carrying UvA-BiTS trackers, then this software can save the SMS messages containing the bird's last known positions which are sent by the tracker to the UvA Bird tracking system's central database.

Real time data analysis

Python
Perl
Mako
+ 1

eitprocessing

eitprocessing is an open source collaborative python library for the processing and analysis of electrical impedance tomography for clinical use.

Jupyter Notebook
Python
Dockerfile

grpc4bmi

Run, read and write model state of a numerical simulation written in a variety of languages remotely from Python

Multi-scale & multi model simulations

Python
C++
Dockerfile
+ 5

iBridges

A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers for research software engineers to integrate compute wokflows and data management.

Data management
iRODS
Metadata Management
+ 1

Python
Jupyter Notebook
Dockerfile
+ 2

kunefe

A Python package that helps users run containerized applications on HPC systems

Agent-based modeling
Apptainer
containers
+ 5

Python
Shell
Dockerfile

Laserfarm

Laserfarm: Laserchicken Framework for Applications in Research in Macroecology. Leverage Laserchicken in distributed fashion to use continental scale point cloud datasets for research.

Python
Jupyter Notebook
Dockerfile

leakybucket

A Python BMI leaky bucket model 🪣

Jupyter Notebook
Python
Dockerfile

Lokum

Deploy GlusterFS, Docker, Spark and JupyterHub services on bare-metal cluster.

Big data
High performance computing
Optimized data handling

Python
HCL
Shell
+ 2

LXCat

An open-access website for collecting, displaying, and downloading electron and ion scattering cross sections for modeling low temperature plasmas.

Optimized data handling

TypeScript
Rust
CSS
+ 2