All software
UNHUDDLE
Neighborhood-aware signal reallocation and normalization for multiplex spatial proteomics.
- AnnData
- imaging mass cytometry
- multiplex proteomics
- + 3
- Python
- TeX
Unraphael
Unraphael is a computer vision tool for art history, designed to support the analysis of figure-outline similarities in images to study Renaissance copying practices. Its user-friendly interface lets researchers inspect structural patterns, revealing insights into artistic techniques.
- computational art analysis
- computer vision
- Image preprocessing
- + 3
- CSS
- Dockerfile
- Python
UNSAT3D
Soil health is essential for infrastructure and plant growth. The UNSAT project aims to improve 3D soil image processing using machine learning and high-fidelity simulation data to study water transport and root-soil interactions during maize growth.
- Data Analysis
- Machine learning
- Python
- Shell
Verticox+
Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution is based on the Verticox algorithm from Dai et al., 2022. It has been adapted to be used within the Vantage6 framework.
- federated learning
- Java
- privacy preservation
- + 3
- Dockerfile
- Java
- Jinja
- + 4
vqls-prototype
Variational Quantum Linear Solver Library.
- Numerical analysis
- Quantum Computing
- Python
VU-Lab
This is the configuration and documentation page of the LARA lab automation setup at the VU. It incorporates SiLA servers for robotic arm, shakers and a microplate reader and runs the LARA lab automation framework for scheduling and orchestration.
- Dynamic scheduling
- laboratory automatization
- orchestration
- Batchfile
- Dockerfile
- Python
- + 1
Winnow
Confidence control and FDR estimation for de novo peptide sequencing
- Machine learning
- mass spectrometry
- python
- Dockerfile
- Makefile
- Python
- + 1
wntr-quantum
wntr-quantum (pronounced winter-quantum) extends the capabilities of the popular wntr package for water network modelling and analysis to quantum computing routine.
- Quantum Computing
- Water Distribution Networks
- Python
- Shell
xarray-regrid
An xarray plugin that adds regridding utilities for datasets and dataarrays.
- geospatial
- python
- xarray
- Python
Xenon Docker images
For your testing needs a collection of Docker images with different file systems and batch schedulers.
- High performance computing
- Workflow technologies
- Clojure
- Dockerfile
- Python
- + 4
X-LAB Plotting Manager
The X-LAB Plotting Manager is a modular framework for turning raw data into plots. It offers a structured, scalable alternative. By enforcing modular components with clear responsibilities and a configurable UI, it replaces tangled plotting scripts with a robust and reproducible analysis pipeline.
- Python
xNoise
- Python