All software
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
- cryo-electron microscopy
- macromolecular structure
- map fitting
- C
- Cuda
- Dockerfile
- + 3
dtscalibration
A Python package to load raw Distributed Temperature Sensing (DTS) files, perform a calibration, and plot the result.
- calibration
- DTS
- fiber optic
- + 1
- Jupyter Notebook
- Python
NPLinker Web Application
This is the NPLinker web application, developed with Plotly Dash. It enables interactive visualization of NPLinker predictions and is designed to be run locally or in a containerized environment.
- Data mining
- Genome
- Metabolome
- + 2
- CSS
- Dockerfile
- Mustache
- + 1
PanTools
PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.
- Data Analysis
- Gene classification
- pangenomics
- Java
- Python
- Roff Manpage
- + 1
QMflows
Construction and efficient execution of computational chemistry workflows.
- Multi-scale & multi model simulations
- Workflow technologies
- Jupyter Notebook
- Python
- Shell
Vantage6
An open-source platform for supporting the development of federated learning projects
- federated learning
- healthcare
- privacy preserving analysis
- + 1
- Dockerfile
- Go Template
- HTML
- + 7
open-DARTS
Open Delft Advanced Research Terra Simulator is a simulation framework for forward and inverse modelling and uncertainty quantification of multi-physics (thermo-hydro-mechanical-chemical) processes in geo-engineering applications as geothermal, CO2 sequestration, water pumping, and hydrogen storage.
- energy transition
- environmental modelling
- geothermal
- + 3
- C++
- CMake
- Cuda
- + 2
GSA report
GSAreport is an application to easily generate reports that describe the global sensitivities of your input parameters as best as possible. You can use the reporting application to inspect which features are important for a given real world function / simulator or model.
- Explainable AI
- Machine learning
- python
- + 1
- CSS
- HTML
- Jupyter Notebook
- + 1
mcfly
Helps you find a suitable neural network configuration for deep learning on time series.
- auto-ml
- deep learning
- Machine learning
- + 1
- CSS
- HTML
- JavaScript
- + 1
4CAT Capture & Analysis Toolkit
The 4CAT Capture and Analysis Toolkit provides modular data capture & analysis for a variety of social media platforms. Its goal is to make the capture and analysis of data from these platforms accessible to people through a web interface, without requiring any programming or web scraping skills.
- Big data
- python
- Social media
- + 1
- CSS
- Dockerfile
- HTML
- + 4
hyphe
A research-driven web-crawler aimed at building, curating and categorizing a corpus of web actors and the network graph of hyperlinks connecting them.
- crawling
- Networks
- python
- + 1
- CSS
- Dockerfile
- HTML
- + 3
Netherlands eScience Center Python Template
Generic template for Python packages, so you can spend less time setting up and configuring, and comply with the Netherlands eScience Center Software Development Guide from the start.
- software development tools
- software sustainability
- template
- Jinja
- Python
- Shell