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37-48 of 83

LORIS

Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.

Computational Neuroscience
database
neuroimaging
+ 3

PHP
JavaScript
TypeScript
+ 9

Mahiru

A prototype for a federated, distributed data sharing and processing system.

Data processing
Data Sharing
Policies
+ 1

Python
Makefile
Dockerfile
+ 2

mzRecal

mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.

mass spectrometry
proteomics

Go
Shell
R
+ 2

Rocket

Rocket is a framework for efficient execution of all-pair applications on heterogeneous platforms.

Big data
GPU
High performance computing
+ 1

Java
Cuda
C++
+ 2

SimVascular

The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.

Cardiovascular
Fluid mechanics
Medical image computing
+ 1

C++
Tcl
Makefile
+ 9

TaxoTagger

DNA barcode identification, powered by semantic searching.

Fungi
Machine learning
semantic search
+ 3

Python
Makefile
Mustache

Abinit

Abinit is a software package based on density functional theory for calculating the properties of solids.

Fortran
Python
M4
+ 15

Arpra

Arpra is a C library for analyzing the propagation of numerical error in arbitrary precision IEEE-754 floating-point computations.

Affine Arithmetic
Arbitrary Precision
Interval Arithmetic
+ 2

C
Makefile
M4

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

ASReview
inter-rater reliability
literature screening
+ 1

HTML
C++
JavaScript
+ 14

c3s-magic-wps

Web Processing Service for Climate Data Analysis in the MAGIC project.

Python
Makefile
Shell
+ 1

Canadian Writing Research Collaboratory (CWRC)

CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.

Canadian culture & history
cultural studies
digital humanities
+ 1

JavaScript
PHP
HTML
+ 16

Cerise

Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.

High performance computing
Optimized data handling
Workflow technologies

Python
Common Workflow Language
Dockerfile
+ 2