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Cover image for NPLinker

NPLinker

Microbial natural products data mining by integrating genomics and metabolomics data

  • Data processing
  • multi-omics integration
  • Jupyter Notebook
  • Python
  • Shell
  • + 2
5
0
Cover image for NPLinker eScience Workshop GenMetMine Materials

NPLinker eScience Workshop GenMetMine Materials

These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining: https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are available in a format facilitating its reuse.

  • Data mining
  • genomics
  • Inter-operability & linked data
  • + 4
    0
    0
    Cover image for Nunaliit

    Nunaliit

    The Nunaliit Atlas Framework aims to make it easy to tell stories and highlight relationships between many different forms of information from a variety of sources, using maps as a central way to connect and interact with the data.

    • atlas
    • cartography
    • database
    • + 6
    • JavaScript
    • Java
    • HTML
    • + 9
    1
    0
    Cover image for OBiBa Agate

    OBiBa Agate

    Agate is a web application that offers users related services to the OBiBa software stack.

    • authentication
    • Epidemiology
    • Java
    • FreeMarker
    • JavaScript
    • + 6
    8
    0
    Cover image for OBiBa Mica

    OBiBa Mica

    Mica is OBiBa's software application that is used to create data web portals for large-scale epidemiological studies or multiple-study consortia.

    • euCanSHare, software integration
    • Java
    • JavaScript
    • FreeMarker
    • + 6
    8
    0
    Cover image for OBiBa Opal

    OBiBa Opal

    Opal is OBiBa's core data repository application for epidemiological studies.

    • euCanSHare, software integration
    • Java
    • Vue
    • TypeScript
    • + 8
    8
    0
    Cover image for Ocean Networks Canada

    Ocean Networks Canada

    By bringing data to the surface, ONC provides ocean intelligence to scientists, governments, organizations, and citizens. Ocean data are archived, processed and made freely available via ONC’s data management system, Oceans 3.0.

      1
      0
      Cover image for OCTSEG

      OCTSEG

      Analyze retinal optical coherence tomography images.

      • Image processing
      • MATLAB
      • M
      2
      0
      Cover image for One button compute

      One button compute

      Web application for running a CWL workflow on a bunch of files.

      • Optimized data handling
      • Workflow technologies
      • Python
      • HTML
      • Common Workflow Language
      2
      0
      Cover image for OpenDA

      OpenDA

      Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.

      • Optimized data handling
      • Java
      • Fortran
      • Python
      • + 22
      4
      0
      Cover image for Orange3 Argument Mining Add-on

      Orange3 Argument Mining Add-on

      This open-source Python package facilitates the processing, analysis, and visualization of argument corpora. Additionally, It offers user-friendly GUIs integrated into the Orange3 scientific workflow platform, enabling non-programmers to utilize its capabilities.

      • Argument mining
      • Natural Language Processing
      • python
      • + 1
      • Python
      3
      0
      Cover image for Orange3 Story Navigator

      Orange3 Story Navigator

      Add-on providing quantitative textual story analysis based on principles in narrative psychology

      • narrative psychology
      • orange3
      • text analysis
      • Python
      4
      0