All software

Magic Castle

Magic Castle aims to recreate the HPC user experience in public clouds.

marzipan

Deploying clusters of VMs on bare metal using OpenNebula, provisioning, and running services made easy by fully configurable scalable automation

Mass Spec Studio for Clinical Proteomics

A fusion of the popular OpenMS suite of functionality with the powerful Mass Spec Studio. Users have access to OpenDIA and OpenPRM to support large scale processing of clinical proteomics data sets.

Medical Image Processing in Python

This lesson introduces some specifics of medical image processing with popular Python libraries such as SimpleITK, Pydicom and NiBabel. Reconstruction algorithms, image and DICOM anonymization, registration, segmentation, data augmentation and generative AI are covered.

mibibio

mibiremo

MiBiReMo (Microbiome Bioremediation Reaction Module) is a Python interface to the PhreeqcRM library. The package is designed to be coupled with transport models to simulate reactive transport in porous media, with applications in environmental and geochemical engineering.

mibiscreen

Data handling and screening package of the Microbiome based remediation Prediction Tool

mibitrans

A collection of analytical and semi-semianalytical solutions for hydrogeological transport phenomena

minimism

A minimal distributed MPI port from UFEMISM, used as a basis for UFEMISM2.0

MINTED

MINTED (Making Identifiers Necessary for Tracking Evolving Data) aims to apply dataset citation Digital Object Identifiers (DOIs) and researcher ORCIDs into ONC's Oceans 3.0 digital infrastructure.

Mixed Meal Model SBML

This software generates the SBML version of the Mixed Meal Model, for predicting the glucose level evolution after the intake of a meal.

MPET

This software is designed to run simulations of batteries with porous electrodes using porous electrode theory, which is a volume-averaged, multiscale approach to capture the coupled behavior of electrolyte and active material within electrodes