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MMSODA Toolbox for MATLAB

MATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.

HTML
MATLAB
TeX
+ 5

Open Computational Multiphysics

OpenCMP is a computational multiphysics software package based on the finite element method

Computational Fluid Dynamics (CFD)
computational Multiphysics
diffuse interface method
+ 3

Python
TeX

PyChelator

PyChelator is a Python-based Colab and web application for metal chelator calculations, taking into account pH, temperature, and ionic strength. The build-in constants can be used for EGTA and ATP as chelators, together with Calcium and Magnesium as metals. User-defined constants can be used.

application
calcium
chelator
+ 7

Jupyter Notebook
JavaScript
HTML
+ 2

asrlitcompare

A tool written in rmarkdown for assessing the level of agreement between two raters following screening in ASReview. Users only need the two .csv files downloaded from ASReview, and the tool will automatically compile a summary report as an HTML file, viewable in your web browser.

ASReview
inter-rater reliability
literature screening
+ 1

HTML
C++
JavaScript
+ 14

BridgeDbR

R package for the BridgeDb Java library making identifier mapping functionality available in the R environment.

persistent identifiers
Statistics

R
TeX
HTML

Canadian Writing Research Collaboratory (CWRC)

CWRC aims to make digital research methods broadly accessible, and to develop an active community of researchers engaged in exploring the potential of collaboration online.

Canadian culture & history
cultural studies
digital humanities
+ 1

JavaScript
PHP
HTML
+ 16

Ceiba

Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.

Optimized data handling

Python
TeX
Shell
+ 1

cleanX

CleanX is an open-source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological images.

Image processing
Machine learning

Jupyter Notebook
Python
TeX
+ 3

HORTON

HORTON is a Helpful Open-source Research Tool for N-fermion systems, written primarily in the Python programming language. The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost.

electronic structure theory
quantum chemistry

Python
C++
Cython
+ 5

HPGEM

hpGEM is a C++ partial differential equation solver. It is intended for Discontinuous Galerkin Finite Element Methods, but can also do normal (conforming) Finite Element Methods and Finite Volume.

Finite Element
High performance computing

C++
CMake
TeX
+ 6

Introduction to deep learning lesson

This lesson gives an introduction to deep learning.

deep learning
lesson
python

Jupyter Notebook
TeX
Python
+ 1

OpenDA

Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.

Optimized data handling

Java
Fortran
Python
+ 22