All software
PAVICS
PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.
- analysis
- climate
- Climate change
- + 5
- CSS
- HTML
- JavaScript
- + 3
PhenoTips
PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.
- API
- deep phenotyping
- genogram
- + 6
- Batchfile
- CSS
- HTML
- + 4
PoreSpy
PoreSpy is a collection of image analysis tools used to extract information from 3D images of porous materials (typically obtained from X-ray tomography).
- image analysis
- porous media
- tomography
- Batchfile
- Python
- Shell
protein-mosaic-q
Open-source research software for quantifying amino-acid clustering in protein structures, developed alongside simulation-based analyses of structural patterns.
- bioinformatics
- Citizen Science
- proteins
- + 1
- Python
qumia-train-scripts
Scripts and files related to ML training for the QUMIA project
- Machine learning
- Neuromuscular
- ultrasound imaging
- Jupyter Notebook
- Python
- Shell
Review Argumentation at Scale
This package contains a scalable pipeline to perform argument reasoning on a dataset of product reviews, to identify the highest quality ones. By tuning both lossy and lossless parameters, it is possible to tune the pipeline to foster the accuracy of the computation or its speed.
- OpenEdge ABL
- Prolog
- Python
- + 1
ROBIST
Robust Optimization by Iterative Scenario Sampling and Statistical Testing
- optimization
- python
- Python
Rocket
Rocket is a framework for efficient execution of all-pair applications on heterogeneous platforms.
- Big data
- GPU
- High performance computing
- + 1
- C++
- Cuda
- Java
- + 2
rocrate-action-recorder
Python package to record calls of Python CLI commands into a Research Object Crate (RO-Crate). Supports RO-Crate 1.1 specification. Specifically the Process Run Crate profile.
- Inter-operability & linked data
- Workflow technologies
- Python
SARXarray
An Xarray extension to process coregistered Single Look Complex (SLC) image stacks acquired by Synthetic Aperture Radar (SAR).
- Dask
- InSAR
- Interferometry
- + 6
- Python
- ReScript
- TeX
scriptcwl
Create CWL workflows by writing a simple Python script.
- CWL
- Workflow technologies
- Common Workflow Language
- Python
SimVascular
The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
- Cardiovascular
- Fluid mechanics
- Medical image computing
- + 1
- Batchfile
- C
- C++
- + 9