All software
DALES
DALES is a large-eddy simulation code designed for studies of the physics of the atmospheric boundary layer, including convective and stable boundary layers as well as cloudy boundary layers.
- Fortran
- C
- TeX
- + 8
MapReader
MapReader is an end-to-end computer vision (CV) pipeline for exploring and analyzing images at scale.
- computer vision
- digital humanities
- geospatial
- + 4
- Python
- TeX
- Dockerfile
- + 1
Clustering Geo-data Cubes
Tool to perform cluster analysis of multi-dimensional geospatial data, running on local or distributed systems.
- Big data
- geospatial
- Machine learning
- + 1
- Python
- Jupyter Notebook
- TeX
pdb2sql
Fast and versatile Python package that leverages SQL queries to parse, manipulate and process biomolecular structure files. The structure files should be in the PDB format and are available on www.rcsb.org.
- Big data
- Optimized data handling
- Python
- TeX
- Makefile
Bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
- bioinformatics
- Cheminformatics
- Java
- TeX
rWikiPathways
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
- bioinformatics
- WikiPathways
- HTML
- R
- TeX
cffconvert
Command line tool to convert CITATION.cff files to various formats used by reference managers such as Zotero and JabRef.
- Python
- TeX
- HTML
- + 1
LUE
LUE is software for storing and manipulating large amounts of information for large numbers of objects. The software is useful, and currently mainly used, in the context of environmental modelling of biological and physical systems, represented by agents and fields.
- Agent-based modeling
- environmental modelling
- field based modelling
- + 6
- C++
- Python
- CMake
- + 6
WEARDA
WEARDA: recording wearable sensor data for human activity monitoring.
- embedded software
- GPS
- Human activity monitoring
- + 4
- C
- TeX
endogenous-macrodynamics-in-algorithmic-recourse
Software and data underlying the publication: Endogenous Macrodynamics in Algorithmic Recourse
- Algorithmic Recourse
- Counterfactual Explanations
- Dynamic Systems
- + 1
- Other
- HTML
- JSON
- + 8
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
Software and data underlying the publication: Faithful Model Explanations through Energy-Constrained Conformal Counterfactuals
- Classification and Regression
- Deep Generative Models & Autoencoders
- Humanities & Computational Social Science
- + 1
- TeX
- Other
- Julia
- + 6
AstronomicAL
An interactive dashboard for visualisation, integration and classification of data using Active Learning.
- Active Learning
- Classification
- Data Analysis
- + 11
- Python
- TeX