All software
DoE2Vec
DoE2Vec is a self-supervised approach to learn exploratory landscape analysis features from design of experiments. The model can be used for downstream meta-learning tasks such as learninig which optimizer works best on a given optimization landscape.
- Machine learning
- optimization
- python
- Python
- R
- Makefile
Code supporting the publication: Gromit: Benchmarking the performance and scalability of blockchain systems
Code supporting the publication: Gromit: Benchmarking the performance and scalability of blockchain systems
- Benchmarking
- Blockchain
- Performance
- + 1
- Other
- Python
- JSON
- + 3
PolarMorphism
PolarMorphism uses results from GWAS of multiple phenotypes to output statistics per SNP that describe its degree of 'sharedness' across the phenotypes of interest and its overall (multivariate) effect size, as well as p-values indicating significance for each statistic.
- genomics
- GWAS
- pleiotropy
- R
FastMLC
Detect clusters in for example large collections of DNA or protein sequences, and visualize the results in a web browser.
- Big data
- Machine learning
- Visualization
- C++
- C
- Makefile
- + 5
Turing Data Safe Haven
Data Safe Haven is an open-source framework for creating Trusted Research Environments (TREs) to analyse sensitive data. It provides a set of scripts that will allow you to deploy, administer and use your own TRE on Microsoft Azure cloud.
- Cloud
- cloud storage
- Infrastructure as code
- + 3
- Python
- Shell
- Jinja
- + 3
jaspProcess
A JASP implementation of the PROCESS macro for SPSS
- Data Analysis
- Statistics
- Visualization
- R
- QML
rWikiPathways
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
- bioinformatics
- WikiPathways
- HTML
- R
- TeX
sv-channels
Genome-wide detection of structural variants using deep learning
- Machine learning
- Python
- Jupyter Notebook
- R
- + 1
TIMP
TIMP is an R package for fitting superposition models that implements the partitioned variable projection algorithm. The package has been extensively applied to modeling spectroscopy and Fluorescence Lifetime Imaging Microscopy (FLIM) datasets. It serves as the backend for the Glotaran software.
- global analysis
- target analysis
- time-resolved spectroscopy
- R
- C
Emma
Emma is a project to create a platform for development of application for Spark and DockerSwarm clusters.
- Big data
- Shell
- Scala
- Python
- + 1
iReceptor Gateway
A Distributed Data Management System and Scientific Gateway for Mining Next Generation Sequence Data from Immune Responses.
- immunogenomics
- Immunology
- iReceptor
- PHP
- Shell
- Blade
- + 7
eEcology Tracker calendar
Calendar overview with daily statistics of GPS-trackers used to track bird movements.
- Visualization
- Python
- Makefile
- JavaScript
- + 5