All software
GridFormat
Header-only C++ Library for grid file I/O
- Grid-based PDE methods
- grid file I/O
- mesh file I/O
- + 3
- C++
- CMake
- Python
- + 1
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- Java
- JavaScript
- TypeScript
- + 6
i-VRESSE workflow-builder
Need to write a complex config file then the i-VRESSE workflow builder might be the tool for you.
- Workflow technologies
- TypeScript
- Python
- CSS
- + 3
LORIS
Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.
- Computational Neuroscience
- database
- neuroimaging
- + 3
- PHP
- JavaScript
- TypeScript
- + 9
Mahiru
A prototype for a federated, distributed data sharing and processing system.
- Data processing
- Data Sharing
- Policies
- + 1
- Python
- Makefile
- Dockerfile
- + 2
Massive PotreeConverter
Use parallel processing to quickly convert large point cloud data sets to the format used by the Potree viewer.
- Big data
- Optimized data handling
- Python
NPLinker
Microbial natural products data mining by integrating genomics and metabolomics data
- Data processing
- multi-omics integration
- Python
- TeX
- Shell
- + 2
Open Computational Multiphysics
OpenCMP is a computational multiphysics software package based on the finite element method
- Computational Fluid Dynamics (CFD)
- computational Multiphysics
- diffuse interface method
- + 3
- Python
- TeX
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- C++
- MAXScript
- Cython
- + 15
OpenPNM
OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.
- Pore network modeling
- C++
- MAXScript
- Cython
- + 15
PAVICS
PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.
- analysis
- climate
- Climate change
- + 5
- HTML
- Jupyter Notebook
- Python
- + 3
PhenoTips
PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.
- API
- deep phenotyping
- genogram
- + 6
- Java
- JavaScript
- HTML
- + 4