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Cover image for IRIDA

IRIDA

Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.

  • genomics
  • infectious disease
  • Java
  • JavaScript
  • TypeScript
  • + 6
3
1
Cover image for i-VRESSE workflow-builder

i-VRESSE workflow-builder

Need to write a complex config file then the i-VRESSE workflow builder might be the tool for you.

  • Workflow technologies
  • TypeScript
  • Python
  • CSS
  • + 3
5
1
Cover image for LORIS

LORIS

Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.

  • Computational Neuroscience
  • database
  • neuroimaging
  • + 3
  • PHP
  • JavaScript
  • TypeScript
  • + 9
8
1
Cover image for Mahiru

Mahiru

A prototype for a federated, distributed data sharing and processing system.

  • Data processing
  • Data Sharing
  • Policies
  • + 1
  • Python
  • Makefile
  • Dockerfile
  • + 2
2
1
Cover image for Massive PotreeConverter

Massive PotreeConverter

Use parallel processing to quickly convert large point cloud data sets to the format used by the Potree viewer.

  • Big data
  • Optimized data handling
  • Python
3
1
Cover image for Open Computational Multiphysics

Open Computational Multiphysics

OpenCMP is a computational multiphysics software package based on the finite element method

  • Computational Fluid Dynamics (CFD)
  • computational Multiphysics
  • diffuse interface method
  • + 3
  • Python
  • TeX
1
1
Cover image for OpenMS

OpenMS

OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.

  • C++
  • mass spectrometry
  • metabolomics
  • + 1
  • C++
  • MAXScript
  • Cython
  • + 15
27
1
Cover image for OpenPNM

OpenPNM

OpenPNM is an open source project aiming to provide porous media researchers with a ready-made framework for performing a wide range of pore network simulations.

  • Pore network modeling
  • C++
  • MAXScript
  • Cython
  • + 15
5
1
Cover image for PAVICS

PAVICS

PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.

  • analysis
  • climate
  • Climate change
  • + 5
  • HTML
  • Jupyter Notebook
  • Python
  • + 3
25
1
Cover image for PhenoTips

PhenoTips

PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.

  • API
  • deep phenotyping
  • genogram
  • + 6
  • Java
  • JavaScript
  • HTML
  • + 4
2
1
Cover image for PoreSpy

PoreSpy

PoreSpy is a collection of image analysis tools used to extract information from 3D images of porous materials (typically obtained from X-ray tomography).

  • image analysis
  • porous media
  • tomography
  • Python
2
1
Cover image for qumia-train-scripts

qumia-train-scripts

Scripts and files related to ML training for the QUMIA project

  • Machine learning
  • Neuromuscular
  • ultrasound imaging
  • Jupyter Notebook
  • Python
  • Shell
3
1