All software
COPASI
COPASI is an open source software for simulation and analysis of biochemical networks and their dynamics. It provides simulations using ODEs, SDEs, or Gillespie's stochastic simulation algorithm, with optional discrete events. COPASI provides several analyses, optimization, and parameter estimation.
- Dynamics
- optimization
- Parameter estimation
- + 3
- Batchfile
- C
- C#
- + 17
Parallel Ice Sheet Model (PISM)
An open-source modelling framework for ice sheets and glaciers
- C++
- geophysics
- Glacier
- + 5
- C
- C++
- CMake
- + 9
AMUSE
Combine existing numerical codes in an easy to use Python framework. With AMUSE you can simulate objects such as star clusters, proto-planetary disks and galaxies.
- High performance computing
- Multi-scale & multi model simulations
- Workflow technologies
- Assembly
- C
- C++
- + 23
opynsim
Python-Native Musculoskeletal Modelling
- Batchfile
- BitBake
- C
- + 14
ROOT
An open-source data analysis framework used by high energy physics and others.
- AppleScript
- Assembly
- Batchfile
- + 29
SIRF
This software is the main output of SyneRBI, the Collaborative Computational Platform for Synergistic Reconstruction for Biomedical Imaging (formerly CCP PETMR).
- Imaging and Image Processing
- C
- C++
- CMake
- + 5
STIR
A software package for tomographic image reconstruction. Primarily used for PET and SPECT.
- Imaging and Image Processing
- Assembly
- Batchfile
- C
- + 10