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61-72 of 518

KNIME molecule viewer nodes

A 3D viewer for large molecules for the KNIME workflow system.

Visualization
Workflow technologies

Java
JavaScript
CSS

KNIME ss-TEA node

A node for the KNIME workflow systems that allows you to identify which residue position in a big protein sequence alignment is specific to ligand binding.

Workflow technologies

Java

GSA report

GSAreport is an application to easily generate reports that describe the global sensitivities of your input parameters as best as possible. You can use the reporting application to inspect which features are important for a given real world function / simulator or model.

Explainable AI
Machine learning
python
+ 1

Python
HTML
CSS
+ 1

sv-callers

Highly portable parallel workflow to detect structural variants in cancer genomes.

Big data
High performance computing
Workflow technologies

Python
Shell

PanTools

PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

Data Analysis
Gene classification
pangenomics

Java
Snakemake
Python
+ 1

HyperCanny

Finds edges in high-dimensional data using the Canny algorithm.

Data Analysis
edge detection
High performance computing

C++
C
Python
+ 3

AHN2 pointcloud viewer

A web application able to visualize the AHN2 point cloud data of the Netherlands.

Big data
Real time data analysis
Visualization

JavaScript
HTML
CSS
+ 1

AMBER

A real-time pipeline to search for Fast Radio Bursts and other transient radio sources.

Big data
GPU
High performance computing
+ 1

C++
CMake

APE

A CLI, Java API and RESTful API for the automated generation of computational pipelines (scientific workflows) from large collections of computational tools.

Java
Program synthesis
Workflow technologies

Java
ANTLR

LitStudy

Explore scientific literature using Python from the comfort of a Jupyter notebook

Inter-operability & linked data
Text analysis & natural language processing
Visualization

Python
HTML

AHN point cloud viewer web service

A web service to serve large point cloud data efficiently using octrees.

Big data
Visualization

Java
Python

OMUSE

A Python environment to interface and couple oceanographic and other earth system model codes.

High performance computing
Multi-scale & multi model simulations

Fortran
Python
HTML
+ 10