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protein-mosaic-q

Open-source research software for quantifying amino-acid clustering in protein structures, developed alongside simulation-based analyses of structural patterns.

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Description

protein-mosaic-q is an open-source Python library for computing the Q and Q_alt structural descriptors, which quantify the spatial clustering of amino acids according to their physicochemical properties in three-dimensional protein structures.

The software works with PDB and mmCIF structure files and provides both a Python API and a command-line interface, supporting reproducible computational analysis of protein structural organization.

It is developed within the broader Proteins Mosaic Q research framework, which also includes simulation-based analyses of structural patterns and citizen-science observations. These complementary approaches support the investigation of amino-acid organization in protein structures.

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  • Python 100%
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FL

Francisco Javier Lobo-Cabrera

FL
Francisco Javier Lobo-Cabrera
JP
José A. Prado-Bassas
Co-supervisor
Universidad de Sevilla: Sevilla, Andalucía, ES - Profesor Titular de Universidad, Análisis Matemático
0000-0002-5670-5400