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Software for "Smart 3D super-resolution microscopy reveals the architecture of the RNA scaffold in a nuclear body"
Software for "Smart 3D super-resolution microscopy reveals the architecture of the RNA scaffold in a nuclear body"
7
mentions
8
contributors
Description
This software repository contains the code accompanying the paper "Smart 3D super-resolution microscopy reveals the architecture of the RNA scaffold in a nuclear body". The repository includes a python algorithm to automatically detect and image paraspeckles using an Abberior STED microscope, as well as Matlab code to rotationally and translationally align the resulting paraspeckle images and perform shape and polarity analyses on them.
Reference papers
Mentions
- 1.Author(s): Laurell F. Kessler, Yunqing Li, Ashwin Balakrishnan, Mike HeilemannPublished in 202610.1021/acsnano.5c21411
- 2.Author(s): Chih-Han Tu, Chen-I Hsu, Jia-Ray YuPublished in 202610.1080/28361512.2026.2617266
- 3.Author(s): Ellen Kazumi Okuda, Laurell Fridolin Kessler, Benjamin Arnold, Ricarda J Riegger, Maria Clara Hernández Cañás, Ewelina Zebrowska, Cem Bakisoglu, Mara Rudigier, Christine Krost, Helder Y Nagasse, Jan Keiten-Schmitz, Stefan Müller, David Stanek, Dorothee Dormann, Kathi Zarnack, Mike Heilemann, Michaela Müller-McNicollPublished in Nucleic Acids Research by Oxford University Press (OUP) in 202510.1093/nar/gkaf713
- 1.Author(s): Tyrese Boddie, Arianna Lacen, Hui-Ting LeePublished in 202610.1021/acs.jpcb.5c07484
- 2.Author(s): David Polanco, Blanca Viguri-Lamata, Thomas S. van Zanten, Nunilo CremadesPublished in 202610.1016/j.sbi.2026.103350
- 3.Author(s): Alfredo Rates, Josiah B. Passmore, Nils Norlin, Lukas C. KapiteinPublished in 202610.1038/s44303-026-00145-y
- 4.Author(s): Laurell F. Kessler, Yunqing Li, Ashwin Balakrishnan, Mike HeilemannPublished by openRxiv in 202510.64898/2025.12.05.692534
Contributors
AB
Ashwin Balakrishnan
BR
Bernd Rieger
EO
Ellen Kazumi Okuda
EB
Enya S. Berrevoets
LK
Laurell F. Kessler
MM
Michaela Müller-McNicoll
MH
Mike Heilemann
SS
Sjoerd Stallinga