MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"

doi:10.4121/19074791

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MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"

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Description

MATLAB scripts belonging to the paper "Predicting metabolic adaptation under
dynamic substrate conditions using a resource dependent kinetic model: A case
study using Saccharomyces cerevisiae"Contains scripts for:- Converting proteome datasets to the model proteome allocation format.- Generating optimized proteomes for both steady-state and dynamic (feast/famine) conditions under user-specified conditions.- Determining the overcapacity present in proteome provided as input under user-specified conditions.

Keywords

proteome allocation model

resource allocation model

Saccharomyces cerevisiae

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