SoftwareApplication
name: Winnow
description: Confidence control and FDR estimation for de novo peptide sequencing
description: https://raw.githubusercontent.com/instadeepai/winnow/refs/heads/main/README.md
code repository: https://github.com/instadeepai/winnow
author: https://orcid.org/0000-0002-1964-3976
author: https://orcid.org/0000-0003-4480-5567
keywords: Machine learning
keywords: python
keywords: mass spectrometry
programming language: Dockerfile
programming language: Makefile
programming language: Python
programming language: Shell
license:
  creative work: creativeWork
    name: Apache-2.0
reference publication: arxiv.2509.24952

https://orcid.org/0000-0002-1964-3976
type: Person
given name: Jemma
family name: Daniel
name: Jemma Daniel
affiliation: Organization
  name: InstaDeep Ltd

https://orcid.org/0000-0003-4480-5567
type: Person
given name: Jeroen
family name: Van Goey
name: Jeroen Van Goey
role name: Staff Research Engineer
affiliation: Organization
  name: InstaDeep

arxiv.2509.24952
type: ScholarlyArticle
name: De novo peptide sequencing rescoring and FDR estimation with Winnow
url: https://doi.org/10.48550%2Farxiv.2509.24952