SoftwareApplication
identifier: 10.5281/zenodo.1464025
name: OCTSEG
description: Analyze retinal optical coherence tomography images.
description: * The retinal layers and the blood vessels of retinal OCT scans can be segmented * Automated segmentation of 6 prominent retinal layers: the inner limiting membrane, outer nerve fiber layer boundary, and retinal pigment epithelium * Automated segmentation of the blood vessel positions on circular scans and batch processing of circular scans and manual correction of possible segmentation errors * Visualization of the data and the segmentation results, including enface views and thickness maps * Export of the segmentation results to CSV text files * Includes segmentation of phantom images * Successfully used in "A Lightpath for Optical Coherence Tomography Imaging" project
code repository: https://github.com/NLeSC/OCTSegmentation
author: Person
  given name: Markus
  family name: Mayer
  name: Markus Mayer
author: https://orcid.org/0000-0002-9834-1756
keywords: Image processing
programming language: M
programming language: MATLAB
license:
  creative work: creativeWork
    name: Apache-2.0

https://orcid.org/0000-0002-9834-1756
type: Person
given name: Elena
family name: Ranguelova
name: Elena Ranguelova
affiliation: Organization
  name: Netherlands eScience Center