SoftwareApplication
identifier: 10.4121/19074791
name: MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
description: MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"
description: MATLAB scripts belonging to the paper "Predicting metabolic adaptation under dynamic substrate conditions using a resource dependent kinetic model: A case study using Saccharomyces cerevisiae"Contains scripts for:- Converting proteome datasets to the model proteome allocation format.- Generating optimized proteomes for both steady-state and dynamic (feast/famine) conditions under user-specified conditions.- Determining the overcapacity present in proteome provided as input under user-specified conditions.
author: https://orcid.org/0000-0001-7232-4352
author: Person
  given name: Siem
  family name: Eerden
  name: Siem Eerden
author: Person
  given name: Baukje
  family name: Sikkema
  name: Baukje Sikkema
author: Person
  given name: Aljoscha
  family name: Wahl
  name: Aljoscha Wahl
keywords: MATLAB scripts
keywords: Dynamic conditions
keywords: Proteome adaptation
keywords: Kinetic Modeling
keywords: Saccharomyces cerevisiae
keywords: proteome allocation model
keywords: resource allocation model
keywords: feast/famine
license:
  creative work: creativeWork
    name: CC0-1.0

https://orcid.org/0000-0001-7232-4352
type: Person
given name: Koen
family name: Verhagen
name: Koen Verhagen